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AP Automation Benefits

Invoice Dispute Management Using AP Automation

We often see finance teams struggling with invoice disputes that take weeks to resolve. In fact, 31% of businesses cite disputed invoices as a key cause of their late supplier payments.

The longer disputes remain unresolved, the greater the strain on your team and the higher the risk of damaging supplier relationships. To make matters worse, the lack of visibility around invoice disputes will further strain your vendor relationships.

That’s why many businesses are turning to AP automation. By streamlining dispute management, automation helps you resolve issues faster and prevent them from occurring in the first place.

In this article, we’ll share 4 effective ways automated invoicing gives you greater visibility over disputed invoices and empowers you to manage them more effectively.

Kasturi Banerjee

by Kasturi Banerjee

Digital Content Writer

Posted 08/10/2025

How Does AP Automation Help Manage Invoice Disputes?

1. Active Monitoring of Invoices

The quickest way to resolve invoice disputes? Stop them from piling up in the first place. That means tackling the root causes head-on.

With AP automation, your team can follow every invoice’s journey from when it’s captured to when it’s exported into your accounting software. 

  • No more tedious data entry
  • No more avoidable errors
  • No more wondering where an invoice is stuck

Instead, you get real-time insights into its status, so you can step in early and keep payments and supplier relationships on track.

If you’re exploring AP automation, choose software that comes with a dedicated ‘dispute’ tab. It’s like having a control tower for all invoices on hold, giving you instant visibility and saving you from the frustrating game of “find the missing invoice.”

2. Easy Identification of Discrepancies 

Of course, simply monitoring invoices isn’t enough if you can’t spot the discrepancies hiding in plain sight. The faster you catch an issue, the less time you’ll spend reviewing each invoice, but outdated invoice-matching policies often can’t keep up with the pace and complexity of modern businesses.

Automated AP handles this for you, instantly flagging mismatches in supplier bank details, agreed pricing, or goods received. This quick, accurate identification means fewer payment delays and faster dispute resolution.

The ripple effect is profound because when problems are handled before they escalate, your team shifts from firefighting to strategic partnership management. Instead of spending Tuesday morning chasing down why a £20,000 payment was rejected, you're analysing spend patterns and negotiating better terms.

3. Expedition of Resolution

The faster you catch discrepancies, the sooner you can resolve disputes. With built-in reminders and automated workflows, AP automation ensures invoices are routed straight to the right approvers, cutting out bottlenecks and speeding up decisions on disputed invoices.

Routed approvals also give you complete visibility into the process: you can see exactly who placed the invoice on hold, who hasn’t approved it yet, and why. This level of transparency keeps everyone accountable and the process moving.

The competitive edge? While your competitors are still playing email tag, your invoices flow through optimised channels that balance control with speed. Your suppliers get paid on time, your cash flow becomes predictable, and your team focuses on strategic tasks. 

For best results, choose automation software that allows customised approval flows based on predefined rules rather than relying on ad-hoc decisions that can slow things down.

4. Direct Communication With Suppliers 

At the end of the day, resolving invoice disputes quickly comes down to one thing: clear, consistent communication with your suppliers. 

The numbers tell the story: While industry benchmarks for invoice disputes hover around 2%, less efficient companies can see rates ranging from 5-15% or worse.

With the right automation platform, every action and message related to an invoice, whether it’s approved or disputed, is logged in one place. This strategic advantage makes your supplier relationships become data-driven conversations rather than reactive damage control. 

Better still, advanced solutions let you communicate directly with suppliers from within the system itself, cutting out the tedious back-and-forth across multiple channels. The result? Issues are easier to trace, disputes are resolved faster, and everyone stays on the same page.

Recent conversations with our customer revealed that since implementing an automation solution, their inboxes have remained mostly clear regarding invoice management. If you want the same results, it’s time to adopt efficient AP automation software. 

Explore how Lightyear’s AP automation solution can help you manage invoice disputes

Kasturi Banerjee

By Kasturi Banerjee

Digital Content Writer